EnBio - gene set and gene vector queries for microarray analysis

The source code for EnBio is maintained in a Subversion repository. It is available by anonymous access:
svn checkout svn://bioinfo2.ucsd.edu/GQuery
Alternatively, a recent version of the code is available for direct download.

Mass Spectrometry Supplement

These pages provide access to supplemental data for papers from the labs of Vineet Bafna and Pavel Pevzner. Please contact Stephen Tanner if you have difficulty downloading this data. See the main proteomics tool page for information on our algorithms, as well as software download links.

Sub-pages

Modified spectra, to accompany the paper "Identification of Post-translational Modifications via Blind Search of Mass-Spectra". Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A. Pevzner. Nature Biotechnology 23, 1562-2567 (01 Dec 2005).

Spectra and annotations, to accompany the paper "Gene annotation using peptide mass spectrometry", to appear in Genome Research.